CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2042 rna-evm.model.Chr16.2042 Chr16 62237696 62238004 uncharacterized protein nan nan
gene-evm.TU.Chr16.2043 rna-evm.model.Chr16.2043 Chr16 62238072 62238341 PREDICTED: zinc finger MYM-type protein 2-like nan nan
gene-evm.TU.Chr16.2046 rna-evm.model.Chr16.2046 Chr16 62355916 62362691 uncharacterized protein nan nan
gene-evm.TU.Chr16.2048 rna-evm.model.Chr16.2048 Chr16 62366739 62394070 PREDICTED: Fibropellin-3 GO:0005509 K16681
gene-evm.TU.Chr16.2049 rna-evm.model.Chr16.2049 Chr16 62417703 62467644 PREDICTED: Mediator of RNA polymerase II transcription subunit 25 GO:0005515;GO:0007165 K15168
gene-evm.TU.Chr16.205_evm.TU.Chr16.206 rna-evm.model.Chr16.205_evm.model.Chr16.206 Chr16 6800427 6806620 PREDICTED: Uncharacterized protein C1orf50 homolog nan nan
gene-evm.TU.Chr16.2052 rna-evm.model.Chr16.2052 Chr16 62553974 62559399 PREDICTED: Chitin synthase GO:0016758 K00698
gene-evm.TU.Chr16.2053 rna-evm.model.Chr16.2053 Chr16 62595529 62596392 PREDICTED: p24 family protein gamma-2 nan K16599
gene-evm.TU.Chr16.2054 rna-evm.model.Chr16.2054 Chr16 62601717 62601923 uncharacterized protein nan nan
gene-evm.TU.Chr16.2055 rna-evm.model.Chr16.2055 Chr16 62617851 62620191 PREDICTED: M-phase inducer phosphatase 1 GO:0004725;GO:0006470;GO:1902751 K05866

For more detailed data, you can explore the Download section to access the full dataset.