CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2031 rna-evm.model.Chr16.2031 Chr16 61983982 61990912 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr16.2032 rna-evm.model.Chr16.2032.1 Chr16 62001794 62008840 PREDICTED: Coiled-coil domain-containing protein 42 homolog nan K25440
gene-evm.TU.Chr16.2033 rna-evm.model.Chr16.2033 Chr16 62009030 62025906 PREDICTED: Protein NipSnap nan nan
gene-evm.TU.Chr16.2034 rna-evm.model.Chr16.2034 Chr16 62035054 62040475 uncharacterized protein nan K20866
gene-evm.TU.Chr16.2035 rna-evm.model.Chr16.2035 Chr16 62044514 62057557 PREDICTED: AP-2 complex subunit beta GO:0006886;GO:0016192;GO:0030117;GO:0030131 K12392
gene-evm.TU.Chr16.2036 rna-evm.model.Chr16.2036 Chr16 62064194 62097206 PREDICTED: HEAT repeat-containing protein 6 nan K24815
gene-evm.TU.Chr16.2038 rna-evm.model.Chr16.2038 Chr16 62140527 62146811 uncharacterized protein nan nan
gene-evm.TU.Chr16.204 rna-evm.model.Chr16.204 Chr16 6764864 6799761 PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase GO:0003824;GO:0004725;GO:0006470;GO:0010181;GO:0016311;GO:0016791;GO:0051536 K15449
gene-evm.TU.Chr16.2040 rna-evm.model.Chr16.2040 Chr16 62182292 62190021 PREDICTED: Cytochrome P450 4F6 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.2041 rna-evm.model.Chr16.2041 Chr16 62223294 62231110 PREDICTED: Cathepsin L1 GO:0006508;GO:0008234 K01365

For more detailed data, you can explore the Download section to access the full dataset.