CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2015 rna-evm.model.Chr16.2015 Chr16 61541663 61545559 PREDICTED: Phospholipase A2 isozymes PA3A/PA3B/PA5 GO:0004623;GO:0006644;GO:0050482 K01047
gene-evm.TU.Chr16.2016 rna-evm.model.Chr16.2016 Chr16 61566747 61566930 uncharacterized protein nan nan
gene-evm.TU.Chr16.2018_evm.TU.Chr16.2017 rna-evm.model.Chr16.2018_evm.model.Chr16.2017 Chr16 61548356 61687538 PREDICTED: Titin GO:0005515 K06754
gene-evm.TU.Chr16.2019 rna-evm.model.Chr16.2019 Chr16 61701048 61726374 PREDICTED: Serine/threonine-protein kinase unc-51 GO:0004672;GO:0004674;GO:0005524;GO:0006468 K21357
gene-evm.TU.Chr16.2020 rna-evm.model.Chr16.2020 Chr16 61726650 61743904 PREDICTED: A-kinase anchor protein 1, mitochondrial GO:0003676;GO:0003723;GO:0005739;GO:0010738;GO:0034237 K16518
gene-evm.TU.Chr16.2021 rna-evm.model.Chr16.2021 Chr16 61747889 61765354 PREDICTED: Septin-5 GO:0005525 K16943
gene-evm.TU.Chr16.2022 rna-evm.model.Chr16.2022 Chr16 61783290 61813957 PREDICTED: Signal peptide peptidase-like 3 GO:0004190;GO:0016020 K09598
gene-evm.TU.Chr16.2024 rna-evm.model.Chr16.2024 Chr16 61853986 61896279 PREDICTED: LIM/homeobox protein Lhx1 GO:0003677 K18493
gene-evm.TU.Chr16.2027 rna-evm.model.Chr16.2027 Chr16 61917113 61918711 PREDICTED: Furin-like protease 2 nan K08654
gene-evm.TU.Chr16.2030 rna-evm.model.Chr16.2030 Chr16 61955850 61976701 PREDICTED: LIM/homeobox protein Lhx1 GO:0003677 K18493

For more detailed data, you can explore the Download section to access the full dataset.