CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2004 rna-evm.model.Chr16.2004 Chr16 61371592 61373359 uncharacterized protein nan K26933
gene-evm.TU.Chr16.2005 rna-evm.model.Chr16.2005 Chr16 61382556 61391091 PREDICTED: Ras-related protein Rab-34 GO:0003924;GO:0005525 K07921
gene-evm.TU.Chr16.2006 rna-evm.model.Chr16.2006 Chr16 61395313 61405541 PREDICTED: 60S ribosomal protein L23a GO:0003735;GO:0005840;GO:0006412 K02893
gene-evm.TU.Chr16.2007 rna-evm.model.Chr16.2007 Chr16 61408479 61414319 PREDICTED: Vacuolar protein sorting-associated protein 53 homolog GO:0000938;GO:0042147 K20299
gene-evm.TU.Chr16.2008 rna-evm.model.Chr16.2008 Chr16 61414946 61425771 PREDICTED: Vacuolar protein sorting-associated protein 53 homolog GO:0000938;GO:0042147 K20299
gene-evm.TU.Chr16.2009 rna-evm.model.Chr16.2009 Chr16 61429473 61435689 PREDICTED: Mitochondrial fission process protein 1 nan K17981
gene-evm.TU.Chr16.2010 rna-evm.model.Chr16.2010 Chr16 61440666 61472637 PREDICTED: TBC1 domain family member 10B nan K19944
gene-evm.TU.Chr16.2011 rna-evm.model.Chr16.2011 Chr16 61483434 61486874 PREDICTED: Zinc finger protein 573 GO:0003676 K09191
gene-evm.TU.Chr16.2012 rna-evm.model.Chr16.2012 Chr16 61496619 61518079 PREDICTED: Zinc finger protein 530 GO:0003676 K22534
gene-evm.TU.Chr16.2014 rna-evm.model.Chr16.2014 Chr16 61531529 61536712 PREDICTED: Chaperone protein DnaJ nan K17867

For more detailed data, you can explore the Download section to access the full dataset.