CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1983 rna-evm.model.Chr16.1983 Chr16 60962171 60962581 PREDICTED: Histone H3 GO:0000786;GO:0003677 K11253
gene-evm.TU.Chr16.1984 rna-evm.model.Chr16.1984 Chr16 60963421 60964001 PREDICTED: Histone H1-delta GO:0000786;GO:0003677;GO:0005634;GO:0006334 K11275
gene-evm.TU.Chr16.1985 rna-evm.model.Chr16.1985 Chr16 60965567 60965966 PREDICTED: Histone H2A GO:0000786;GO:0003677;GO:0005634 K11251
gene-evm.TU.Chr16.1986 rna-evm.model.Chr16.1986 Chr16 60992490 60994598 PREDICTED: Uncharacterized protein KIAA1958 nan K21754
gene-evm.TU.Chr16.1988 rna-evm.model.Chr16.1988 Chr16 61022103 61030980 PREDICTED: Coiled-coil domain-containing protein 146 nan K04567
gene-evm.TU.Chr16.1989 rna-evm.model.Chr16.1989.2 Chr16 61099775 61136381 PREDICTED: Ankyrin repeat domain-containing protein 50 GO:0005515 K15502
gene-evm.TU.Chr16.199 rna-evm.model.Chr16.199 Chr16 6557269 6565954 uncharacterized protein nan K07218
gene-evm.TU.Chr16.1990 rna-evm.model.Chr16.1990 Chr16 61143401 61162148 PREDICTED: 39S ribosomal protein L44, mitochondrial nan K17425
gene-evm.TU.Chr16.1991 rna-evm.model.Chr16.1991 Chr16 61162276 61172062 PREDICTED: glucose-induced degradation protein 4 GO:0005761 K22250
gene-evm.TU.Chr16.1992 rna-evm.model.Chr16.1992 Chr16 61178626 61184996 PREDICTED: Protocadherin-11 Y-linked GO:0005509;GO:0007156;GO:0016020 K16507

For more detailed data, you can explore the Download section to access the full dataset.