CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1994 rna-evm.model.Chr16.1994 Chr16 61201483 61202603 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr16.1995 rna-evm.model.Chr16.1995 Chr16 61223131 61229912 PREDICTED: Peptidyl-tRNA hydrolase 2, mitochondrial GO:0004045 K04794
gene-evm.TU.Chr16.1996 rna-evm.model.Chr16.1996 Chr16 61233723 61237863 PREDICTED: PI-PLC X domain-containing protein 2 nan K01771
gene-evm.TU.Chr16.1998 rna-evm.model.Chr16.1998 Chr16 61250255 61266591 PREDICTED: Interferon-induced helicase C domain-containing protein 1 nan K12646
gene-evm.TU.Chr16.2 rna-evm.model.Chr16.2 Chr16 103750 104787 PREDICTED: gamma-tubulin complex component 6 nan nan
gene-evm.TU.Chr16.20 rna-evm.model.Chr16.20 Chr16 581327 587352 uncharacterized protein nan nan
gene-evm.TU.Chr16.200 rna-evm.model.Chr16.200 Chr16 6572741 6617144 uncharacterized protein nan K10566
gene-evm.TU.Chr16.2001 rna-evm.model.Chr16.2001 Chr16 61283684 61300805 PREDICTED: Adhesion G protein-coupled receptor L3 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599
gene-evm.TU.Chr16.2002 rna-evm.model.Chr16.2002 Chr16 61317447 61318502 uncharacterized protein nan K05947
gene-evm.TU.Chr16.2003 rna-evm.model.Chr16.2003.1 Chr16 61333372 61371282 PREDICTED: Coronin-1B GO:0005515 K13886

For more detailed data, you can explore the Download section to access the full dataset.