CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2487 rna-evm.model.Chr1.2487 Chr1 78058818 78063497 PREDICTED: Ras-related protein Rab-33B GO:0003924;GO:0005525 K07920
gene-evm.TU.Chr1.2488 rna-evm.model.Chr1.2488 Chr1 78063776 78093212 PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit GO:0005515 K20792
gene-evm.TU.Chr1.2489 rna-evm.model.Chr1.2489 Chr1 78103920 78106646 PREDICTED: Streptavidin GO:0009374 nan
gene-evm.TU.Chr1.2490 rna-evm.model.Chr1.2490 Chr1 78139742 78141542 uncharacterized protein nan K04520
gene-evm.TU.Chr1.2491 rna-evm.model.Chr1.2491 Chr1 78144956 78146219 uncharacterized protein nan nan
gene-evm.TU.Chr1.2492 rna-evm.model.Chr1.2492 Chr1 78148382 78150507 PREDICTED: Protein MB21D2 nan K23092
gene-evm.TU.Chr1.2493 rna-evm.model.Chr1.2493 Chr1 78156668 78159561 PREDICTED: Protein MB21D2 nan K23092
gene-evm.TU.Chr1.2494 rna-evm.model.Chr1.2494 Chr1 78161993 78164145 PREDICTED: Protein MB21D2 nan K23092
gene-evm.TU.Chr1.2495 rna-evm.model.Chr1.2495 Chr1 78167955 78188943 PREDICTED: Probable serine/threonine-protein kinase DDB_G0267514 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K04424
gene-evm.TU.Chr1.2496 rna-evm.model.Chr1.2496 Chr1 78213521 78254758 PREDICTED: Leucine--tRNA ligase, cytoplasmic GO:0000166;GO:0004812;GO:0004823;GO:0005524;GO:0006418;GO:0006429 K01869

For more detailed data, you can explore the Download section to access the full dataset.