CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1958 rna-evm.model.Chr16.1958 Chr16 60237054 60238230 uncharacterized protein nan K22809
gene-evm.TU.Chr16.1960 rna-evm.model.Chr16.1960 Chr16 60249480 60297337 PREDICTED: Neural-cadherin GO:0005509;GO:0007156;GO:0016020 K04600
gene-evm.TU.Chr16.1961 rna-evm.model.Chr16.1961 Chr16 60298929 60317760 PREDICTED: Kelch-like protein 20 GO:0005515 K10461
gene-evm.TU.Chr16.1962 rna-evm.model.Chr16.1962 Chr16 60326760 60334003 PREDICTED: Carbonic anhydrase 14 GO:0004089;GO:0005886;GO:0008270;GO:0031225 K01672
gene-evm.TU.Chr16.1963 rna-evm.model.Chr16.1963 Chr16 60346114 60376310 PREDICTED: Carbonic anhydrase 12 GO:0004089;GO:0008270;GO:0016020 K01672
gene-evm.TU.Chr16.1966 rna-evm.model.Chr16.1966 Chr16 60435346 60437334 PREDICTED: Macrophage mannose receptor 1 nan K10066
gene-evm.TU.Chr16.1967 rna-evm.model.Chr16.1967 Chr16 60452592 60457698 PREDICTED: C-type lectin domain family 10 member A nan K10060
gene-evm.TU.Chr16.1969 rna-evm.model.Chr16.1969 Chr16 60475410 60500311 PREDICTED: E3 ubiquitin-protein ligase DCST1 GO:0016020 K22375
gene-evm.TU.Chr16.197 rna-evm.model.Chr16.197 Chr16 6540844 6549739 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr16.1970 rna-evm.model.Chr16.1970 Chr16 60539199 60550181 PREDICTED: Uncharacterized protein CXorf65 homolog nan nan

For more detailed data, you can explore the Download section to access the full dataset.