CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1946 rna-evm.model.Chr16.1946 Chr16 60001243 60002196 PREDICTED: interleukin 17C GO:0005125;GO:0005576 K05491
gene-evm.TU.Chr16.1947 rna-evm.model.Chr16.1947 Chr16 60018221 60020448 PREDICTED: Interleukin-17B GO:0005125;GO:0005576 K05490
gene-evm.TU.Chr16.1949 rna-evm.model.Chr16.1949 Chr16 60027754 60033169 PREDICTED: Interleukin 17-like protein GO:0005125;GO:0005576 K05494
gene-evm.TU.Chr16.195 rna-evm.model.Chr16.195 Chr16 6524114 6525004 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr16.1951 rna-evm.model.Chr16.1951 Chr16 60068139 60072077 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K10184
gene-evm.TU.Chr16.1953 rna-evm.model.Chr16.1953 Chr16 60093424 60102299 PREDICTED: interleukin 17F GO:0005125;GO:0005576 K05494
gene-evm.TU.Chr16.1954 rna-evm.model.Chr16.1954 Chr16 60117003 60119532 PREDICTED: interleukin 17F GO:0005125;GO:0005576 K05491
gene-evm.TU.Chr16.1955 rna-evm.model.Chr16.1955 Chr16 60122069 60138407 PREDICTED: DNA repair protein XRCC1 GO:0000012;GO:0003684;GO:0005634 K10803
gene-evm.TU.Chr16.1956 rna-evm.model.Chr16.1956 Chr16 60151100 60171736 PREDICTED: Probable palmitoyltransferase ZDHHC8 nan K20030
gene-evm.TU.Chr16.1957 rna-evm.model.Chr16.1957 Chr16 60183830 60210669 PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 GO:0004672;GO:0005524;GO:0006468 K00924

For more detailed data, you can explore the Download section to access the full dataset.