CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1935 rna-evm.model.Chr16.1935 Chr16 59761079 59762179 uncharacterized protein nan K24828
gene-evm.TU.Chr16.1936 rna-evm.model.Chr16.1936 Chr16 59786100 59795313 PREDICTED: Dynein regulatory complex subunit 2 GO:0005858;GO:0070286 K23728
gene-evm.TU.Chr16.1937 rna-evm.model.Chr16.1937 Chr16 59810012 59814935 PREDICTED: Refilin-B GO:0031005;GO:0061181;GO:0061572 nan
gene-evm.TU.Chr16.1938 rna-evm.model.Chr16.1938 Chr16 59873682 59881462 PREDICTED: E3 ubiquitin-protein ligase RGLG4 nan K16280
gene-evm.TU.Chr16.1939 rna-evm.model.Chr16.1939 Chr16 59898845 59900601 PREDICTED: MICAL-like protein 2 nan K13583
gene-evm.TU.Chr16.194 rna-evm.model.Chr16.194 Chr16 6458237 6495930 uncharacterized protein nan K07218
gene-evm.TU.Chr16.1941 rna-evm.model.Chr16.1941 Chr16 59929566 59934819 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO GO:0016491;GO:0055114 K23107
gene-evm.TU.Chr16.1942 rna-evm.model.Chr16.1942 Chr16 59944550 59965546 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO nan K23107
gene-evm.TU.Chr16.1944 rna-evm.model.Chr16.1944 Chr16 59981526 59982856 PREDICTED: Interleukin-17C GO:0005125;GO:0005576 K05490
gene-evm.TU.Chr16.1945 rna-evm.model.Chr16.1945 Chr16 59985938 59992686 PREDICTED: Interleukin-17C GO:0005125;GO:0005576 K05494

For more detailed data, you can explore the Download section to access the full dataset.