CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1910 rna-evm.model.Chr16.1910 Chr16 58509239 58541162 uncharacterized protein nan K24881
gene-evm.TU.Chr16.1911 rna-evm.model.Chr16.1911 Chr16 58545310 58558083 PREDICTED: Matrix metalloproteinase-14 GO:0004222;GO:0006508;GO:0008237;GO:0008270;GO:0031012 K07763
gene-evm.TU.Chr16.1912 rna-evm.model.Chr16.1912 Chr16 58566821 58570090 uncharacterized protein nan K20696
gene-evm.TU.Chr16.1913 rna-evm.model.Chr16.1913 Chr16 58582365 58584901 PREDICTED: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 GO:0005509 K23901
gene-evm.TU.Chr16.1914 rna-evm.model.Chr16.1914 Chr16 58597911 58624611 PREDICTED: C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr16.1917 rna-evm.model.Chr16.1917 Chr16 58788040 58790611 PREDICTED: ATP-dependent DNA helicase Q-like 3 GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr16.1918 rna-evm.model.Chr16.1918 Chr16 59048311 59050266 uncharacterized protein nan nan
gene-evm.TU.Chr16.192_evm.TU.Chr16.198 rna-evm.model.Chr16.192_evm.model.Chr16.198 Chr16 6416617 6556780 PREDICTED: Aquaporin-2 GO:0015267;GO:0016020;GO:0055085 K09876
gene-evm.TU.Chr16.1920 rna-evm.model.Chr16.1920 Chr16 59111566 59113638 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K08322
gene-evm.TU.Chr16.1921 rna-evm.model.Chr16.1921 Chr16 59119776 59122189 uncharacterized protein nan K07164

For more detailed data, you can explore the Download section to access the full dataset.