CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.190 rna-evm.model.Chr16.190 Chr16 6373266 6387874 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr16.1900 rna-evm.model.Chr16.1900 Chr16 58255287 58264683 PREDICTED: Zinc finger HIT domain-containing protein 3 nan K23309
gene-evm.TU.Chr16.1901 rna-evm.model.Chr16.1901 Chr16 58270951 58295767 PREDICTED: Nuclear cap-binding protein subunit 3 GO:0000340;GO:0003729 K23718
gene-evm.TU.Chr16.1902 rna-evm.model.Chr16.1902 Chr16 58296419 58346749 PREDICTED: Sphingomyelin phosphodiesterase 4 GO:0050290 K12353
gene-evm.TU.Chr16.1903 rna-evm.model.Chr16.1903 Chr16 58351377 58374145 PREDICTED: Trichoplein keratin filament-binding protein nan K16811
gene-evm.TU.Chr16.1905 rna-evm.model.Chr16.1905 Chr16 58407050 58409630 PREDICTED: CLUMA_CG013364, nan K25777
gene-evm.TU.Chr16.1907 rna-evm.model.Chr16.1907 Chr16 58450106 58458220 PREDICTED: DNA repair protein RAD51 homolog 4 GO:0003677;GO:0005524;GO:0006281;GO:0008094 K10871
gene-evm.TU.Chr16.1908 rna-evm.model.Chr16.1908 Chr16 58460454 58484820 PREDICTED: Polymerase delta-interacting protein 2 GO:0003677 K17809
gene-evm.TU.Chr16.1909 rna-evm.model.Chr16.1909 Chr16 58488726 58497580 PREDICTED: 3-mercaptopyruvate sulfurtransferase nan K01011
gene-evm.TU.Chr16.191 rna-evm.model.Chr16.191 Chr16 6415324 6416538 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676;GO:0003677 K22594

For more detailed data, you can explore the Download section to access the full dataset.