CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1890 rna-evm.model.Chr16.1890 Chr16 57994221 58012138 PREDICTED: Pescadillo homolog GO:0005730;GO:0042254 K14843
gene-evm.TU.Chr16.1891 rna-evm.model.Chr16.1891 Chr16 58027022 58032257 PREDICTED: Cilia- and flagella-associated protein 57 nan K06267
gene-evm.TU.Chr16.1893 rna-evm.model.Chr16.1893 Chr16 58056848 58060928 uncharacterized protein nan K07976
gene-evm.TU.Chr16.1894 rna-evm.model.Chr16.1894 Chr16 58077813 58088688 PREDICTED: Ras-related protein RabG1 GO:0003924;GO:0005525 K07976
gene-evm.TU.Chr16.1895 rna-evm.model.Chr16.1895 Chr16 58099637 58111754 PREDICTED: Centromere protein Q nan K11509
gene-evm.TU.Chr16.1896 rna-evm.model.Chr16.1896 Chr16 58114452 58126281 PREDICTED: Atrial natriuretic peptide receptor 3 GO:0016020 K12323
gene-evm.TU.Chr16.1897 rna-evm.model.Chr16.1897 Chr16 58127798 58145197 PREDICTED: rRNA methyltransferase 1, mitochondrial GO:0003723;GO:0006396;GO:0008168;GO:0008173 K15507
gene-evm.TU.Chr16.1898 rna-evm.model.Chr16.1898 Chr16 58150469 58171023 PREDICTED: Hydroxylamine reductase GO:0005737;GO:0016491;GO:0016661;GO:0051536;GO:0055114 K05601
gene-evm.TU.Chr16.1899 rna-evm.model.Chr16.1899 Chr16 58236050 58244791 PREDICTED: Alpha-(1,3)-fucosyltransferase fut-3 GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr16.19 rna-evm.model.Chr16.19 Chr16 572763 577755 PREDICTED: DNA-directed RNA polymerase II subunit RPB11 GO:0006351;GO:0046983 K03008

For more detailed data, you can explore the Download section to access the full dataset.