CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1881 rna-evm.model.Chr16.1881.1 Chr16 57856131 57871958 PREDICTED: M-phase phosphoprotein 8 nan K01963
gene-evm.TU.Chr16.1882 rna-evm.model.Chr16.1882 Chr16 57892937 57903680 PREDICTED: Double-stranded RNA-specific adenosine deaminase GO:0003723;GO:0004000;GO:0006396 K12968
gene-evm.TU.Chr16.1883 rna-evm.model.Chr16.1883 Chr16 57915210 57918910 PREDICTED: Nuclear hormone receptor E75 GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr16.1884 rna-evm.model.Chr16.1884 Chr16 57931275 57933146 PREDICTED: Vitamin D3 receptor B GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr16.1885 rna-evm.model.Chr16.1885 Chr16 57944634 57946334 PREDICTED: Vitamin D3 receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr16.1886 rna-evm.model.Chr16.1886 Chr16 57953116 57954876 PREDICTED: Vitamin D3 receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr16.1887 rna-evm.model.Chr16.1887 Chr16 57975002 57976854 PREDICTED: Vitamin D3 receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08533
gene-evm.TU.Chr16.1888 rna-evm.model.Chr16.1888 Chr16 57981901 57986260 PREDICTED: SCF E3 ubiquitin ligase complex F-box protein grrA GO:0006388;GO:0016772 K10281
gene-evm.TU.Chr16.1889 rna-evm.model.Chr16.1889 Chr16 57986976 57991560 PREDICTED: 60S ribosomal protein L6 GO:0003735;GO:0005840;GO:0006412 K02934
gene-evm.TU.Chr16.189 rna-evm.model.Chr16.189 Chr16 6349740 6351611 PREDICTED: SRC kinase signaling inhibitor 1 nan K07492

For more detailed data, you can explore the Download section to access the full dataset.