CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2475 rna-evm.model.Chr1.2475 Chr1 77747238 77748061 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr1.2477 rna-evm.model.Chr1.2477 Chr1 77809037 77820191 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0003950;GO:0046872 K15259
gene-evm.TU.Chr1.2478 rna-evm.model.Chr1.2478.3 Chr1 77857954 77911240 PREDICTED: Adenylate cyclase type 9 GO:0009190;GO:0016849;GO:0035556 K08049
gene-evm.TU.Chr1.2479 rna-evm.model.Chr1.2479 Chr1 77917336 77918874 PREDICTED: Multimerin-1 nan K23284
gene-evm.TU.Chr1.2480 rna-evm.model.Chr1.2480 Chr1 77926197 77927629 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr1.2481 rna-evm.model.Chr1.2481 Chr1 77930227 77962380 PREDICTED: Cytoplasmic FMR1-interacting protein nan K05749
gene-evm.TU.Chr1.2482 rna-evm.model.Chr1.2482 Chr1 77972515 77985913 PREDICTED: Cytoplasmic FMR1-interacting protein nan K05749
gene-evm.TU.Chr1.2484 rna-evm.model.Chr1.2484 Chr1 77996160 77998132 PREDICTED: Microsomal glutathione S-transferase 2 nan K00807
gene-evm.TU.Chr1.2485 rna-evm.model.Chr1.2485 Chr1 78009072 78020506 PREDICTED: Ras-related protein Rab-30 GO:0003924;GO:0005525 K07917
gene-evm.TU.Chr1.2486 rna-evm.model.Chr1.2486 Chr1 78023055 78052088 PREDICTED: Pre-mRNA cleavage complex 2 protein Pcf11 GO:0006886 K14400

For more detailed data, you can explore the Download section to access the full dataset.