CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1853 rna-evm.model.Chr16.1853 Chr16 57157268 57193282 PREDICTED: Guanylate-binding protein 2 GO:0003924;GO:0005525 K20897
gene-evm.TU.Chr16.1858 rna-evm.model.Chr16.1858 Chr16 57281787 57282440 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K03464
gene-evm.TU.Chr16.1859 rna-evm.model.Chr16.1859 Chr16 57282529 57301059 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.186 rna-evm.model.Chr16.186 Chr16 6255279 6255967 PREDICTED: kelch-like protein 2/3 GO:0046983 K24674
gene-evm.TU.Chr16.1860 rna-evm.model.Chr16.1860 Chr16 57315568 57382895 PREDICTED: Guanylate-binding protein 3 GO:0003924;GO:0005525 K20897
gene-evm.TU.Chr16.1862_evm.TU.Chr16.1861 rna-evm.model.Chr16.1862_evm.model.Chr16.1861 Chr16 57392600 57413301 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.1863 rna-evm.model.Chr16.1863 Chr16 57421350 57443041 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.1864 rna-evm.model.Chr16.1864.1 Chr16 57452991 57510071 PREDICTED: Sulfotransferase 1C4 GO:0008146 K01025
gene-evm.TU.Chr16.1865 rna-evm.model.Chr16.1865 Chr16 57516013 57534222 uncharacterized protein nan K19873
gene-evm.TU.Chr16.1866 rna-evm.model.Chr16.1866 Chr16 57535345 57551136 uncharacterized protein nan K19873

For more detailed data, you can explore the Download section to access the full dataset.