CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1867 rna-evm.model.Chr16.1867 Chr16 57573591 57585421 PREDICTED: Solute carrier family 13 member 5 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.187 rna-evm.model.Chr16.187 Chr16 6298143 6301391 PREDICTED: myotubularin-related protein 10/11/12 nan K12170
gene-evm.TU.Chr16.1872 rna-evm.model.Chr16.1872 Chr16 57621721 57638229 PREDICTED: fukutin-related protein [EC:2.7.8.-] nan K19873
gene-evm.TU.Chr16.1873 rna-evm.model.Chr16.1873 Chr16 57648171 57679548 PREDICTED: Solute carrier family 13 member 3 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.1875 rna-evm.model.Chr16.1875 Chr16 57688376 57706861 PREDICTED: Solute carrier family 13 member 2 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.1876 rna-evm.model.Chr16.1876 Chr16 57720420 57728959 PREDICTED: Golgi SNAP receptor complex member 1 GO:0000139;GO:0005801;GO:0006888;GO:0016020 K08495
gene-evm.TU.Chr16.1877 rna-evm.model.Chr16.1877 Chr16 57731670 57736227 PREDICTED: Centromere protein V GO:0016846 K03396
gene-evm.TU.Chr16.1878 rna-evm.model.Chr16.1878 Chr16 57738381 57772865 PREDICTED: [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial GO:0004672;GO:0016310;GO:0016772 K00905
gene-evm.TU.Chr16.1879 rna-evm.model.Chr16.1879 Chr16 57780018 57838436 PREDICTED: Lysine-specific demethylase 2A GO:0003677;GO:0005515;GO:0008270 K10276
gene-evm.TU.Chr16.1880 rna-evm.model.Chr16.1880 Chr16 57839097 57844157 PREDICTED: Calcium release-activated calcium channel protein 1 nan K16056

For more detailed data, you can explore the Download section to access the full dataset.