CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1837 rna-evm.model.Chr16.1837 Chr16 56764992 56772454 PREDICTED: Zinc finger protein 227 GO:0003676 K09228
gene-evm.TU.Chr16.1838 rna-evm.model.Chr16.1838 Chr16 56790727 56814555 PREDICTED: Putative transporter SVOPL GO:0016020;GO:0022857;GO:0055085 K08369
gene-evm.TU.Chr16.184 rna-evm.model.Chr16.184 Chr16 6196492 6205994 uncharacterized protein nan K07218
gene-evm.TU.Chr16.1841 rna-evm.model.Chr16.1841 Chr16 56839205 56839651 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan K10804
gene-evm.TU.Chr16.1845 rna-evm.model.Chr16.1845 Chr16 56877123 56880156 uncharacterized protein nan K03520
gene-evm.TU.Chr16.1846 rna-evm.model.Chr16.1846 Chr16 56882920 56883898 uncharacterized protein nan K04560
gene-evm.TU.Chr16.1848 rna-evm.model.Chr16.1848 Chr16 56895293 56920877 PREDICTED: E3 ubiquitin-protein ligase TRIM37 GO:0005515;GO:0008270 K10608
gene-evm.TU.Chr16.1849 rna-evm.model.Chr16.1849 Chr16 56937952 57059835 PREDICTED: tRNA wybutosine-synthesizing protein 4 GO:0005515;GO:0008168;GO:0032259 K15451
gene-evm.TU.Chr16.185 rna-evm.model.Chr16.185 Chr16 6207172 6242637 uncharacterized protein nan K10566
gene-evm.TU.Chr16.1851 rna-evm.model.Chr16.1851 Chr16 57089272 57093861 PREDICTED: Sedoheptulokinase GO:0005975;GO:0016773 K11214

For more detailed data, you can explore the Download section to access the full dataset.