CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1815 rna-evm.model.Chr16.1815 Chr16 56213685 56217040 PREDICTED: Macrophage migration inhibitory factor homolog nan K10028
gene-evm.TU.Chr16.1816 rna-evm.model.Chr16.1816 Chr16 56263904 56270772 PREDICTED: Agrin GO:0005515 K23615
gene-evm.TU.Chr16.1817 rna-evm.model.Chr16.1817 Chr16 56274488 56292540 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr16.1819 rna-evm.model.Chr16.1819 Chr16 56326039 56354014 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr16.182 rna-evm.model.Chr16.182 Chr16 6142828 6156247 PREDICTED: Pre-mRNA-processing factor 19 GO:0000398;GO:0000974;GO:0004842;GO:0005515;GO:0006281;GO:0016567;GO:0061630 K10599
gene-evm.TU.Chr16.1821 rna-evm.model.Chr16.1821 Chr16 56387348 56417912 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.1824 rna-evm.model.Chr16.1824 Chr16 56503241 56504473 PREDICTED: striated muscle preferentially expressed protein kinase nan K20899
gene-evm.TU.Chr16.1825 rna-evm.model.Chr16.1825 Chr16 56505514 56506479 PREDICTED: Guanylate-binding protein 4 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.1826 rna-evm.model.Chr16.1826 Chr16 56511111 56518254 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.1827 rna-evm.model.Chr16.1827 Chr16 56526777 56536855 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0008289 K08753

For more detailed data, you can explore the Download section to access the full dataset.