CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1806 rna-evm.model.Chr16.1806 Chr16 56086474 56102172 uncharacterized protein nan K20250
gene-evm.TU.Chr16.1807 rna-evm.model.Chr16.1807 Chr16 56104178 56118299 PREDICTED: Retinal-binding protein nan K26544
gene-evm.TU.Chr16.1808 rna-evm.model.Chr16.1808 Chr16 56124357 56133757 PREDICTED: Zinc finger matrin-type protein 5 GO:0003676;GO:0008270;GO:0046872 K13152
gene-evm.TU.Chr16.1809 rna-evm.model.Chr16.1809 Chr16 56134600 56140721 PREDICTED: cingulin-like nan K09291
gene-evm.TU.Chr16.181 rna-evm.model.Chr16.181 Chr16 6113178 6131284 PREDICTED: Lysophospholipase D GDPD1 GO:0006629;GO:0008081 K22387
gene-evm.TU.Chr16.1810 rna-evm.model.Chr16.1810 Chr16 56141445 56143575 uncharacterized protein nan nan
gene-evm.TU.Chr16.1811 rna-evm.model.Chr16.1811 Chr16 56163920 56167569 PREDICTED: CUB and sushi domain-containing protein 2 GO:0001525;GO:0005021;GO:0007411;GO:0009887;GO:0016020;GO:0017154;GO:0019838;GO:0035767;GO:0048010;GO:0071526 K01316
gene-evm.TU.Chr16.1812 rna-evm.model.Chr16.1812 Chr16 56168816 56197872 PREDICTED: Synaptic vesicle 2-related protein GO:0016020;GO:0055085 K08369
gene-evm.TU.Chr16.1813 rna-evm.model.Chr16.1813 Chr16 56201115 56206920 PREDICTED: Perlucin nan K06468
gene-evm.TU.Chr16.1814 rna-evm.model.Chr16.1814 Chr16 56209828 56213110 PREDICTED: Perlucin-like protein nan K06468

For more detailed data, you can explore the Download section to access the full dataset.