CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1797 rna-evm.model.Chr16.1797 Chr16 55852197 55854373 uncharacterized protein nan nan
gene-evm.TU.Chr16.1798 rna-evm.model.Chr16.1798 Chr16 55857126 55935753 PREDICTED: CAP-Gly domain-containing linker protein 1 nan K10421
gene-evm.TU.Chr16.1799 rna-evm.model.Chr16.1799 Chr16 55937549 55938163 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K18629
gene-evm.TU.Chr16.180 rna-evm.model.Chr16.180 Chr16 6116102 6117535 uncharacterized protein nan nan
gene-evm.TU.Chr16.1800 rna-evm.model.Chr16.1800 Chr16 55942236 55971394 PREDICTED: Transcription elongation factor SPT6 GO:0003676;GO:0003677;GO:0032968 K11292
gene-evm.TU.Chr16.1801 rna-evm.model.Chr16.1801 Chr16 55987379 55998642 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr16.1802 rna-evm.model.Chr16.1802 Chr16 56001430 56019104 PREDICTED: Transcription elongation factor SPT6 GO:0003676;GO:0032968 K11292
gene-evm.TU.Chr16.1803 rna-evm.model.Chr16.1803 Chr16 56019689 56020509 PREDICTED: transcription elongation factor SPT6 nan nan
gene-evm.TU.Chr16.1804 rna-evm.model.Chr16.1804 Chr16 56036498 56047756 PREDICTED: Probable serine racemase nan K12235
gene-evm.TU.Chr16.1805 rna-evm.model.Chr16.1805.1 Chr16 56047987 56078852 PREDICTED: SEC14-like protein 2 nan K26544

For more detailed data, you can explore the Download section to access the full dataset.