CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1787 rna-evm.model.Chr16.1787 Chr16 55577422 55578015 PREDICTED: BRISC and BRCA1-A complex member 1 nan K22241
gene-evm.TU.Chr16.1788 rna-evm.model.Chr16.1788 Chr16 55677038 55679588 PREDICTED: Beta-1,4-mannosyltransferase egh GO:0019187 K02359
gene-evm.TU.Chr16.1789 rna-evm.model.Chr16.1789 Chr16 55708585 55726018 PREDICTED: Mitochondrial ubiquitin ligase activator of nfkb 1 GO:0004842;GO:0006996;GO:0016567 K15688
gene-evm.TU.Chr16.179 rna-evm.model.Chr16.179 Chr16 6107363 6108628 uncharacterized protein nan K17834
gene-evm.TU.Chr16.1790 rna-evm.model.Chr16.1790 Chr16 55743497 55753100 uncharacterized protein nan K02044
gene-evm.TU.Chr16.1792 rna-evm.model.Chr16.1792 Chr16 55774793 55776786 PREDICTED: M-phase inducer phosphatase GO:0004725;GO:0006470;GO:1902751 K05866
gene-evm.TU.Chr16.1793 rna-evm.model.Chr16.1793.1 Chr16 55778627 55819969 PREDICTED: gamma-secretase subunit APH-1A nan K20396
gene-evm.TU.Chr16.1794 rna-evm.model.Chr16.1794 Chr16 55822245 55827237 PREDICTED: UPF0454 protein C12orf49 homolog nan K24536
gene-evm.TU.Chr16.1795 rna-evm.model.Chr16.1795 Chr16 55827425 55837016 PREDICTED: RING finger and transmembrane domain-containing protein 2 nan K22379
gene-evm.TU.Chr16.1796 rna-evm.model.Chr16.1796 Chr16 55839846 55850919 PREDICTED: Density-regulated protein homolog GO:0003743;GO:0006413 K24272

For more detailed data, you can explore the Download section to access the full dataset.