CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1765 rna-evm.model.Chr16.1765 Chr16 54669508 54674144 PREDICTED: Tektin-1 nan K18628
gene-evm.TU.Chr16.1766 rna-evm.model.Chr16.1766 Chr16 54674384 54705678 PREDICTED: Tricarboxylate transport protein, mitochondrial nan K15100
gene-evm.TU.Chr16.1767 rna-evm.model.Chr16.1767 Chr16 54716443 54721452 PREDICTED: Glutathione S-transferase theta-1 GO:0005515 K00799
gene-evm.TU.Chr16.1768 rna-evm.model.Chr16.1768 Chr16 54801445 54801996 PREDICTED: elongation factor Ts nan K10790
gene-evm.TU.Chr16.1769 rna-evm.model.Chr16.1769 Chr16 54808528 54828511 PREDICTED: Cartilage matrix protein nan K06238
gene-evm.TU.Chr16.177 rna-evm.model.Chr16.177.1 Chr16 6077862 6097799 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 GO:0000786;GO:0003677 K23718
gene-evm.TU.Chr16.1770 rna-evm.model.Chr16.1770 Chr16 54962919 54968700 PREDICTED: Lipoyltransferase 1, mitochondrial GO:0036211;GO:0009249 K10105
gene-evm.TU.Chr16.1771 rna-evm.model.Chr16.1771 Chr16 54985016 55000265 PREDICTED: TLC domain-containing protein 2 GO:0016020 K17357
gene-evm.TU.Chr16.1772 rna-evm.model.Chr16.1772 Chr16 55063790 55064131 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan nan
gene-evm.TU.Chr16.1774 rna-evm.model.Chr16.1774 Chr16 55091834 55107715 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.