CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1754 rna-evm.model.Chr16.1754 Chr16 54391177 54398880 PREDICTED: mucin-2 GO:0005515 K06829
gene-evm.TU.Chr16.1755 rna-evm.model.Chr16.1755 Chr16 54420363 54446663 PREDICTED: Protein rogdi homolog nan K24628
gene-evm.TU.Chr16.1757 rna-evm.model.Chr16.1757 Chr16 54450837 54452596 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K05220
gene-evm.TU.Chr16.1758 rna-evm.model.Chr16.1758 Chr16 54454985 54459594 PREDICTED: exosome complex component RRP45 nan K10804
gene-evm.TU.Chr16.176 rna-evm.model.Chr16.176 Chr16 6072713 6073649 PREDICTED: Syntaxin-1A homolog GO:0016020 K04560
gene-evm.TU.Chr16.1760 rna-evm.model.Chr16.1760 Chr16 54468145 54479102 PREDICTED: Protein CASP GO:0006891;GO:0030173 K26836
gene-evm.TU.Chr16.1761 rna-evm.model.Chr16.1761.4 Chr16 54497300 54540099 PREDICTED: Protein CASP GO:0003677 K09313
gene-evm.TU.Chr16.1762 rna-evm.model.Chr16.1762 Chr16 54565164 54596151 PREDICTED: Homeobox protein cut-like 1 nan K09313
gene-evm.TU.Chr16.1763 rna-evm.model.Chr16.1763 Chr16 54596364 54620375 PREDICTED: Nuclear pore complex protein Nup88 GO:0000055;GO:0000056;GO:0006913;GO:0017056 K14318
gene-evm.TU.Chr16.1764 rna-evm.model.Chr16.1764 Chr16 54647800 54665668 PREDICTED: F-box only protein 21 GO:0003677;GO:0005515 K10301

For more detailed data, you can explore the Download section to access the full dataset.