CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.246 rna-evm.model.Chr1.246 Chr1 7273668 7282325 PREDICTED: peptide-O-fucosyltransferase [EC:2.4.1.221] nan K07494
gene-evm.TU.Chr1.2460 rna-evm.model.Chr1.2460 Chr1 77198480 77211981 PREDICTED: 39S ribosomal protein L30, mitochondrial GO:0003735;GO:0006412;GO:0015934 K02907
gene-evm.TU.Chr1.2461 rna-evm.model.Chr1.2461 Chr1 77220668 77226157 uncharacterized protein nan K14212
gene-evm.TU.Chr1.2462 rna-evm.model.Chr1.2462 Chr1 77228518 77327106 PREDICTED: Transient receptor potential-gamma protein GO:0005216;GO:0005262;GO:0005515;GO:0006811;GO:0016020;GO:0055085;GO:0070588 K04967
gene-evm.TU.Chr1.2466 rna-evm.model.Chr1.2466 Chr1 77437456 77455810 PREDICTED: Hyaluronan mediated motility receptor GO:0005540 K06267
gene-evm.TU.Chr1.2467 rna-evm.model.Chr1.2467 Chr1 77483588 77511128 PREDICTED: Transcription factor IIIA GO:0003676 K09191
gene-evm.TU.Chr1.2468 rna-evm.model.Chr1.2468 Chr1 77519034 77534251 uncharacterized protein nan K13812
gene-evm.TU.Chr1.2469 rna-evm.model.Chr1.2469.1 Chr1 77534435 77608046 PREDICTED: C-Jun-amino-terminal kinase-interacting protein 3 GO:0005078 K20317
gene-evm.TU.Chr1.2470 rna-evm.model.Chr1.2470 Chr1 77627917 77628384 PREDICTED: Protein GVQW3 nan K06283
gene-evm.TU.Chr1.2471 rna-evm.model.Chr1.2471 Chr1 77628450 77629185 PREDICTED: Mariner Mos1 transposase nan K11433

For more detailed data, you can explore the Download section to access the full dataset.