CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1743 rna-evm.model.Chr16.1743 Chr16 54224764 54228088 PREDICTED: mucin-5AC nan K06238
gene-evm.TU.Chr16.1744 rna-evm.model.Chr16.1744 Chr16 54238067 54248920 uncharacterized protein nan nan
gene-evm.TU.Chr16.1745 rna-evm.model.Chr16.1745 Chr16 54249098 54260727 PREDICTED: dentin sialophosphoprotein-like nan nan
gene-evm.TU.Chr16.1746 rna-evm.model.Chr16.1746 Chr16 54269451 54278886 PREDICTED: serine/arginine repetitive matrix protein 1 nan K23612
gene-evm.TU.Chr16.1747 rna-evm.model.Chr16.1747 Chr16 54293120 54296652 PREDICTED: serine/arginine repetitive matrix protein 1-like nan K02184
gene-evm.TU.Chr16.1748 rna-evm.model.Chr16.1748 Chr16 54303532 54306340 PREDICTED: peripheral myelin protein 22 GO:0016020 K24190
gene-evm.TU.Chr16.1749 rna-evm.model.Chr16.1749 Chr16 54311029 54344108 PREDICTED: NADPH oxidoreductase A GO:0016491;GO:0055114 K00380
gene-evm.TU.Chr16.175_evm.TU.Chr16.177 rna-evm.model.Chr16.175_evm.model.Chr16.177 Chr16 6042429 6097799 PREDICTED: Protein mono-ADP-ribosyltransferase PARP4 GO:0003950;GO:0006471 K24510
gene-evm.TU.Chr16.1752 rna-evm.model.Chr16.1752 Chr16 54374036 54378103 PREDICTED: inner nuclear membrane protein Man1 nan nan
gene-evm.TU.Chr16.1753 rna-evm.model.Chr16.1753 Chr16 54378220 54385329 PREDICTED: inner nuclear membrane protein Man1 nan K21233

For more detailed data, you can explore the Download section to access the full dataset.