CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1730 rna-evm.model.Chr16.1730 Chr16 53844706 53847524 uncharacterized protein nan nan
gene-evm.TU.Chr16.1731 rna-evm.model.Chr16.1731 Chr16 53848236 53855507 PREDICTED: Isochorismatase domain-containing protein 1 GO:0003824 K23359
gene-evm.TU.Chr16.1732 rna-evm.model.Chr16.1732 Chr16 53855740 53871691 PREDICTED: Protein N-terminal glutamine amidohydrolase GO:0008418;GO:0070773 K21286
gene-evm.TU.Chr16.1735 rna-evm.model.Chr16.1735 Chr16 53906388 53909670 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr16.1736 rna-evm.model.Chr16.1736 Chr16 53919724 53936322 PREDICTED: TLC domain-containing protein 2 GO:0016020 K04709
gene-evm.TU.Chr16.1737 rna-evm.model.Chr16.1737 Chr16 53952638 53965209 PREDICTED: Collagen alpha-5(VI) chain nan K06238
gene-evm.TU.Chr16.1738 rna-evm.model.Chr16.1738 Chr16 53996008 53999794 PREDICTED: TLC domain-containing protein 2 nan K08098
gene-evm.TU.Chr16.1739 rna-evm.model.Chr16.1739 Chr16 54018773 54094080 PREDICTED: Collagen alpha-5(VI) chain nan K06238
gene-evm.TU.Chr16.174 rna-evm.model.Chr16.174 Chr16 6019229 6023812 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0016491 K00505
gene-evm.TU.Chr16.1742 rna-evm.model.Chr16.1742 Chr16 54217432 54224428 PREDICTED: Collagen alpha-6(VI) chain nan K06238

For more detailed data, you can explore the Download section to access the full dataset.