CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1698 rna-evm.model.Chr16.1698 Chr16 52850300 52862406 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr16.1699 rna-evm.model.Chr16.1699 Chr16 52896939 52897826 uncharacterized protein nan K22755
gene-evm.TU.Chr16.17 rna-evm.model.Chr16.17 Chr16 550458 564691 PREDICTED: DNA-directed RNA polymerase II subunit RPB11 GO:0006351;GO:0046983 K03008
gene-evm.TU.Chr16.170 rna-evm.model.Chr16.170 Chr16 5905368 5939516 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0016491 K00505
gene-evm.TU.Chr16.1700 rna-evm.model.Chr16.1700 Chr16 52899161 52899355 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr16.1707_evm.TU.Chr16.1708 rna-evm.model.Chr16.1707_evm.model.Chr16.1708 Chr16 53039518 53056816 PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial GO:0016020;GO:0016651;GO:0051539;GO:0055114 K03941
gene-evm.TU.Chr16.1709 rna-evm.model.Chr16.1709 Chr16 53066997 53076060 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] GO:0016020 K24190
gene-evm.TU.Chr16.171 rna-evm.model.Chr16.171 Chr16 5967638 5983173 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0005507;GO:0016491;GO:0016716;GO:0033162;GO:0042438;GO:0055114 K00505
gene-evm.TU.Chr16.1711 rna-evm.model.Chr16.1711 Chr16 53102025 53105542 PREDICTED: Rhodopsin, GQ-coupled GO:0004930;GO:0007186;GO:0016020 K08439
gene-evm.TU.Chr16.1714 rna-evm.model.Chr16.1714 Chr16 53401509 53401677 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan

For more detailed data, you can explore the Download section to access the full dataset.