CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1716 rna-evm.model.Chr16.1716 Chr16 53541657 53542361 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr16.1717 rna-evm.model.Chr16.1717 Chr16 53545021 53546686 uncharacterized protein nan K26102
gene-evm.TU.Chr16.1718 rna-evm.model.Chr16.1718 Chr16 53573416 53574125 PREDICTED: E3 ubiquitin-protein ligase UBR2 [EC:2.3.2.27] nan K07494
gene-evm.TU.Chr16.1719 rna-evm.model.Chr16.1719 Chr16 53575707 53576543 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 GO:0003677 K18191
gene-evm.TU.Chr16.172 rna-evm.model.Chr16.172 Chr16 5985402 5996885 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0005507;GO:0016491;GO:0016716;GO:0033162;GO:0042438;GO:0055114 K00505
gene-evm.TU.Chr16.1725 rna-evm.model.Chr16.1725 Chr16 53698935 53713709 PREDICTED: PHD finger protein 12 GO:0003714;GO:0005515;GO:0045892 K26244
gene-evm.TU.Chr16.1726 rna-evm.model.Chr16.1726 Chr16 53720741 53787415 PREDICTED: TATA-binding protein-associated factor 2N GO:0003676;GO:0003723;GO:0006355 K13209
gene-evm.TU.Chr16.1727 rna-evm.model.Chr16.1727 Chr16 53805363 53808190 uncharacterized protein nan nan
gene-evm.TU.Chr16.1728 rna-evm.model.Chr16.1728 Chr16 53818399 53840611 PREDICTED: Beta-ureidopropionase GO:0006807 K01431
gene-evm.TU.Chr16.1729 rna-evm.model.Chr16.1729 Chr16 53841544 53843098 uncharacterized protein GO:0005515 K23603

For more detailed data, you can explore the Download section to access the full dataset.