CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1689 rna-evm.model.Chr16.1689 Chr16 52553867 52601116 PREDICTED: Two pore calcium channel protein 1 GO:0005216;GO:0005245;GO:0006811;GO:0016020;GO:0055085 K16896
gene-evm.TU.Chr16.169 rna-evm.model.Chr16.169 Chr16 5817686 5899758 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0016491 K00505
gene-evm.TU.Chr16.1690 rna-evm.model.Chr16.1690 Chr16 52621843 52645076 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr16.1691 rna-evm.model.Chr16.1691 Chr16 52654225 52679328 PREDICTED: Unconventional myosin-XIX GO:0003774;GO:0005515;GO:0005524;GO:0016459 K10357
gene-evm.TU.Chr16.1692 rna-evm.model.Chr16.1692 Chr16 52688130 52707808 PREDICTED: WD repeat and SOCS box-containing protein 1 GO:0005515 K10341
gene-evm.TU.Chr16.1693 rna-evm.model.Chr16.1693 Chr16 52736402 52740714 PREDICTED: Zinc finger SWIM domain-containing protein 7 GO:0008270 K25770
gene-evm.TU.Chr16.1694 rna-evm.model.Chr16.1694 Chr16 52752985 52760674 PREDICTED: Protein phosphatase 1D GO:0003824;GO:0004722;GO:0006470 K10147
gene-evm.TU.Chr16.1695 rna-evm.model.Chr16.1695 Chr16 52767909 52790145 PREDICTED: Cytospin-A GO:0005515 K23028
gene-evm.TU.Chr16.1696 rna-evm.model.Chr16.1696 Chr16 52817077 52837270 PREDICTED: BICD family-like cargo adapter 1 nan K16756
gene-evm.TU.Chr16.1697 rna-evm.model.Chr16.1697 Chr16 52840756 52846871 PREDICTED: Protein ABHD11 nan K13703

For more detailed data, you can explore the Download section to access the full dataset.