CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1678 rna-evm.model.Chr16.1678 Chr16 52374339 52394305 PREDICTED: Sodium/myo-inositol cotransporter 2 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr16.1679 rna-evm.model.Chr16.1679 Chr16 52401297 52414945 PREDICTED: Proline dehydrogenase 1, mitochondrial GO:0004657;GO:0006562 K00318
gene-evm.TU.Chr16.1681 rna-evm.model.Chr16.1681 Chr16 52417266 52428100 PREDICTED: Cell cycle checkpoint protein RAD1 GO:0000077;GO:0005634 K02830
gene-evm.TU.Chr16.1682 rna-evm.model.Chr16.1682 Chr16 52430198 52443708 PREDICTED: Argininosuccinate lyase GO:0004056;GO:0042450 K01755
gene-evm.TU.Chr16.1683 rna-evm.model.Chr16.1683 Chr16 52447553 52450942 uncharacterized protein nan K04238
gene-evm.TU.Chr16.1684 rna-evm.model.Chr16.1684 Chr16 52461127 52477202 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr16.1685 rna-evm.model.Chr16.1685 Chr16 52480559 52484187 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr16.1686 rna-evm.model.Chr16.1686 Chr16 52487804 52524747 PREDICTED: Protein moonraker GO:0007099 K21765
gene-evm.TU.Chr16.1687 rna-evm.model.Chr16.1687 Chr16 52529445 52536400 uncharacterized protein GO:0042981 K02832
gene-evm.TU.Chr16.1688 rna-evm.model.Chr16.1688 Chr16 52538784 52547286 PREDICTED: dCTP pyrophosphatase 1 GO:0009143;GO:0047429 K16904

For more detailed data, you can explore the Download section to access the full dataset.