CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1666 rna-evm.model.Chr16.1666 Chr16 52220267 52231139 PREDICTED: Glycosyltransferase 1 domain-containing protein 1 nan K26816
gene-evm.TU.Chr16.1668 rna-evm.model.Chr16.1668 Chr16 52243040 52262112 uncharacterized protein nan nan
gene-evm.TU.Chr16.1669 rna-evm.model.Chr16.1669 Chr16 52268232 52270830 uncharacterized protein nan nan
gene-evm.TU.Chr16.167 rna-evm.model.Chr16.167 Chr16 5798149 5803750 PREDICTED: E3 ubiquitin-protein ligase RNF185 nan K10666
gene-evm.TU.Chr16.1670 rna-evm.model.Chr16.1670 Chr16 52271726 52302815 PREDICTED: Meckel syndrome type 1 protein homolog nan K19332
gene-evm.TU.Chr16.1671_evm.TU.Chr16.1672 rna-evm.model.Chr16.1671_evm.model.Chr16.1672 Chr16 52304573 52315183 PREDICTED: 2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 nan K07561
gene-evm.TU.Chr16.1673 rna-evm.model.Chr16.1673 Chr16 52315351 52316886 PREDICTED: TP53-regulated inhibitor of apoptosis 1-B nan K17968
gene-evm.TU.Chr16.1674 rna-evm.model.Chr16.1674 Chr16 52318978 52324859 PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 GO:0005515;GO:0051260 K15074
gene-evm.TU.Chr16.1675 rna-evm.model.Chr16.1675 Chr16 52328347 52333573 PREDICTED: TNF receptor-associated factor 4 GO:0005515;GO:0008270 K09848
gene-evm.TU.Chr16.1676 rna-evm.model.Chr16.1676 Chr16 52353150 52354000 PREDICTED: A-kinase anchor protein 7 isoform gamma nan K16524

For more detailed data, you can explore the Download section to access the full dataset.