CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.165 rna-evm.model.Chr16.165 Chr16 5655658 5787544 PREDICTED: Calcium/calmodulin-dependent protein kinase kinase 1 GO:0004672;GO:0005524;GO:0006468 K00908
gene-evm.TU.Chr16.1655 rna-evm.model.Chr16.1655 Chr16 51714476 51945690 PREDICTED: trichohyalin nan K20282
gene-evm.TU.Chr16.1656 rna-evm.model.Chr16.1656 Chr16 51960851 51962343 uncharacterized protein nan nan
gene-evm.TU.Chr16.1657 rna-evm.model.Chr16.1657 Chr16 51968616 51978117 PREDICTED: Hemicentin-1 nan K25409
gene-evm.TU.Chr16.166 rna-evm.model.Chr16.166 Chr16 5794158 5795317 PREDICTED: myosin heavy chain, embryonic smooth muscle nan K16308
gene-evm.TU.Chr16.1660 rna-evm.model.Chr16.1660 Chr16 52119252 52119905 PREDICTED: tigger transposable element-derived protein 6-like GO:0003676 K11496
gene-evm.TU.Chr16.1662 rna-evm.model.Chr16.1662 Chr16 52190070 52191348 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr16.1663 rna-evm.model.Chr16.1663 Chr16 52200982 52201533 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr16.1664 rna-evm.model.Chr16.1664.1 Chr16 52211743 52212870 uncharacterized protein nan K02073
gene-evm.TU.Chr16.1665 rna-evm.model.Chr16.1665 Chr16 52213890 52214924 uncharacterized protein nan K11719

For more detailed data, you can explore the Download section to access the full dataset.