CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1630 rna-evm.model.Chr16.1630 Chr16 51298937 51327501 PREDICTED: Inactive peptidyl-prolyl cis-trans isomerase FKBP6 GO:0003755;GO:0005515;GO:0034587 K09572
gene-evm.TU.Chr16.1631 rna-evm.model.Chr16.1631 Chr16 51338828 51356532 PREDICTED: Mitogen-activated protein kinase 7 GO:0004672;GO:0005524;GO:0006468 K04464
gene-evm.TU.Chr16.1632 rna-evm.model.Chr16.1632 Chr16 51366414 51367570 uncharacterized protein nan K23644
gene-evm.TU.Chr16.1633 rna-evm.model.Chr16.1633 Chr16 51374436 51378518 PREDICTED: Derlin-2 nan K13989
gene-evm.TU.Chr16.1634_evm.TU.Chr16.1635 rna-evm.model.Chr16.1634_evm.model.Chr16.1635 Chr16 51381834 51395078 PREDICTED: Sin3 histone deacetylase corepressor complex component SDS3 nan K19201
gene-evm.TU.Chr16.1639 rna-evm.model.Chr16.1639 Chr16 51529042 51542542 PREDICTED: Thrombospondin-2 GO:0016525 K10064
gene-evm.TU.Chr16.164 rna-evm.model.Chr16.164.1 Chr16 5575446 5635465 PREDICTED: Huntingtin-interacting protein 1 GO:0003779;GO:0005543;GO:0006897;GO:0030276 K04559
gene-evm.TU.Chr16.1641 rna-evm.model.Chr16.1641 Chr16 51580876 51582177 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr16.1646 rna-evm.model.Chr16.1646 Chr16 51586081 51586908 PREDICTED: muscle M-line assembly protein unc-89-like nan K16645
gene-evm.TU.Chr16.1647 rna-evm.model.Chr16.1647 Chr16 51586955 51587611 uncharacterized protein nan K12063

For more detailed data, you can explore the Download section to access the full dataset.