CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1620 rna-evm.model.Chr16.1620 Chr16 50819495 50837914 PREDICTED: Ankyrin repeat domain-containing protein 55 GO:0005515 K19626
gene-evm.TU.Chr16.1621 rna-evm.model.Chr16.1621.3 Chr16 50856639 50909315 PREDICTED: microtubule-associated serine/threonine kinase [EC:2.7.11.1] nan K27092
gene-evm.TU.Chr16.1623 rna-evm.model.Chr16.1623 Chr16 51008660 51032186 uncharacterized protein nan K07114
gene-evm.TU.Chr16.1624 rna-evm.model.Chr16.1624 Chr16 51042822 51044554 uncharacterized protein nan nan
gene-evm.TU.Chr16.1625 rna-evm.model.Chr16.1625 Chr16 51120476 51122144 uncharacterized protein nan nan
gene-evm.TU.Chr16.1626 rna-evm.model.Chr16.1626 Chr16 51132683 51229534 PREDICTED: E3 ubiquitin-protein ligase HECTD1 [EC:2.3.2.26] GO:0004842;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr16.1627 rna-evm.model.Chr16.1627 Chr16 51232690 51245413 PREDICTED: E3 ubiquitin-protein ligase HERC2 GO:0004842;GO:0016567;GO:0046872 K07114
gene-evm.TU.Chr16.1628 rna-evm.model.Chr16.1628 Chr16 51250232 51267969 PREDICTED: Mitogen-activated protein kinase 7 GO:0004672;GO:0005524;GO:0006468 K04464
gene-evm.TU.Chr16.1629 rna-evm.model.Chr16.1629 Chr16 51276434 51295305 PREDICTED: Inactive peptidyl-prolyl cis-trans isomerase FKBP6 GO:0003755;GO:0005515;GO:0034587 K09572
gene-evm.TU.Chr16.163 rna-evm.model.Chr16.163 Chr16 5567851 5573331 PREDICTED: G patch domain-containing protein 3 GO:0003676;GO:0032480;GO:0039536 K13103

For more detailed data, you can explore the Download section to access the full dataset.