CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2450 rna-evm.model.Chr1.2450 Chr1 76894835 76940070 PREDICTED: LIM and calponin homology domains-containing protein 1 GO:0005515;GO:0023051;GO:0030155 K06084
gene-evm.TU.Chr1.2451 rna-evm.model.Chr1.2451 Chr1 76953335 76972669 PREDICTED: F-box/WD repeat-containing protein 7 GO:0005515 K10260
gene-evm.TU.Chr1.2452 rna-evm.model.Chr1.2452 Chr1 76978940 76987801 uncharacterized protein GO:0005515;GO:0006401;GO:0055087 K09667
gene-evm.TU.Chr1.2453 rna-evm.model.Chr1.2453 Chr1 76990932 76997676 PREDICTED: Transmembrane protein 218 nan K26674
gene-evm.TU.Chr1.2454 rna-evm.model.Chr1.2454 Chr1 77005006 77028779 PREDICTED: FTS and Hook-interacting protein homolog nan K26420
gene-evm.TU.Chr1.2455 rna-evm.model.Chr1.2455 Chr1 77082667 77104588 PREDICTED: Probable urea active transporter 1 GO:0016020;GO:0022857;GO:0055085 K20989
gene-evm.TU.Chr1.2456 rna-evm.model.Chr1.2456 Chr1 77114462 77121871 PREDICTED: Tryptophan 2,3-dioxygenase GO:0004833;GO:0019441;GO:0020037 K00453
gene-evm.TU.Chr1.2457 rna-evm.model.Chr1.2457 Chr1 77129692 77133361 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim8 GO:0005758;GO:0072321 K17780
gene-evm.TU.Chr1.2458 rna-evm.model.Chr1.2458 Chr1 77135760 77154550 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.2459 rna-evm.model.Chr1.2459.1 Chr1 77155586 77171792 PREDICTED: Paramyosin GO:0003774;GO:0016459 K17751

For more detailed data, you can explore the Download section to access the full dataset.