CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.161 rna-evm.model.Chr16.161 Chr16 5505259 5550448 PREDICTED: Nucleoredoxin GO:0045454 K17609
gene-evm.TU.Chr16.1612 rna-evm.model.Chr16.1612 Chr16 50364812 50371277 PREDICTED: Exonuclease V GO:0045145 K17815
gene-evm.TU.Chr16.1613 rna-evm.model.Chr16.1613 Chr16 50371552 50388807 PREDICTED: Protein LIAT1 GO:0016598 K18342
gene-evm.TU.Chr16.1614 rna-evm.model.Chr16.1614 Chr16 50394811 50397934 PREDICTED: 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1 GO:0003854;GO:0006694;GO:0016616;GO:0055114 K00070
gene-evm.TU.Chr16.1615 rna-evm.model.Chr16.1615 Chr16 50432278 50432528 uncharacterized protein nan nan
gene-evm.TU.Chr16.1616 rna-evm.model.Chr16.1616 Chr16 50433032 50433517 PREDICTED: collagen, type VI, alpha nan K00986
gene-evm.TU.Chr16.1617 rna-evm.model.Chr16.1617 Chr16 50589420 50613704 PREDICTED: Cyclic nucleotide-gated channel rod photoreceptor subunit alpha GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04950
gene-evm.TU.Chr16.1618 rna-evm.model.Chr16.1618 Chr16 50801045 50803339 PREDICTED: Tripartite motif-containing protein 3 GO:0008270;GO:0046872 K12026
gene-evm.TU.Chr16.1619 rna-evm.model.Chr16.1619 Chr16 50806388 50819265 PREDICTED: Serine/threonine-protein phosphatase PP1-alpha catalytic subunit GO:0016787 K06269
gene-evm.TU.Chr16.162 rna-evm.model.Chr16.162 Chr16 5552122 5564025 PREDICTED: Hermansky-Pudlak syndrome 4 protein nan K20194

For more detailed data, you can explore the Download section to access the full dataset.