CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1588 rna-evm.model.Chr16.1588 Chr16 49580802 49591041 PREDICTED: SH2B adapter protein 1 GO:0007165;GO:0035591 K12459
gene-evm.TU.Chr16.1589 rna-evm.model.Chr16.1589 Chr16 49635195 49636612 PREDICTED: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr16.159 rna-evm.model.Chr16.159 Chr16 5468914 5482779 PREDICTED: Poly(A)-specific ribonuclease PNLDC1 nan K01148
gene-evm.TU.Chr16.1590 rna-evm.model.Chr16.1590 Chr16 49689815 49695841 PREDICTED: Alpha-ketoglutarate-dependent taurine dioxygenase GO:0016491;GO:0055114 K06912
gene-evm.TU.Chr16.1594 rna-evm.model.Chr16.1594 Chr16 49729085 49768986 PREDICTED: Leucine-zipper-like transcriptional regulator 1 GO:0005515 K23330
gene-evm.TU.Chr16.1595 rna-evm.model.Chr16.1595 Chr16 49775162 49811498 PREDICTED: Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform GO:0004672;GO:0004689;GO:0005516;GO:0005524;GO:0005964;GO:0005978;GO:0006468 K00871
gene-evm.TU.Chr16.1596 rna-evm.model.Chr16.1596 Chr16 49865147 49866838 uncharacterized protein nan K04849
gene-evm.TU.Chr16.1597 rna-evm.model.Chr16.1597 Chr16 49884216 49886299 uncharacterized protein nan K25493
gene-evm.TU.Chr16.1598 rna-evm.model.Chr16.1598 Chr16 49888291 49898817 PREDICTED: Tyrosinase-like protein 2 GO:0016491 K00505
gene-evm.TU.Chr16.1599 rna-evm.model.Chr16.1599 Chr16 49910197 49920696 PREDICTED: Putative tyrosinase-like protein tyr-3 GO:0016491 K00505

For more detailed data, you can explore the Download section to access the full dataset.