CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1576 rna-evm.model.Chr16.1576 Chr16 49294333 49337670 PREDICTED: Coagulation factor X GO:0004252;GO:0006508 K01362
gene-evm.TU.Chr16.1577 rna-evm.model.Chr16.1577 Chr16 49354152 49373173 PREDICTED: Pre-rRNA-processing protein TSR1 homolog GO:0005634;GO:0006606;GO:0042254;GO:0061608 K14799
gene-evm.TU.Chr16.1578 rna-evm.model.Chr16.1578 Chr16 49374981 49387064 PREDICTED: Cell division cycle protein 123 homolog nan nan
gene-evm.TU.Chr16.1580 rna-evm.model.Chr16.1580 Chr16 49425833 49434396 PREDICTED: agrin GO:0005515 K19924
gene-evm.TU.Chr16.1582 rna-evm.model.Chr16.1582 Chr16 49448519 49451564 uncharacterized protein nan K06665
gene-evm.TU.Chr16.1583 rna-evm.model.Chr16.1583 Chr16 49456651 49468480 PREDICTED: Prolyl 4-hydroxylase subunit alpha-1 GO:0004656;GO:0005515;GO:0005783;GO:0016702;GO:0055114 K00472
gene-evm.TU.Chr16.1584 rna-evm.model.Chr16.1584 Chr16 49474201 49487341 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0008289 K08752
gene-evm.TU.Chr16.1585 rna-evm.model.Chr16.1585 Chr16 49521229 49530453 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0008289 K08752
gene-evm.TU.Chr16.1586 rna-evm.model.Chr16.1586 Chr16 49537345 49549331 PREDICTED: Phosphatidylinositol transfer protein alpha isoform GO:0005548;GO:0015914 K24069
gene-evm.TU.Chr16.1587 rna-evm.model.Chr16.1587 Chr16 49558066 49576413 PREDICTED: Twinkle protein, mitochondrial GO:0003678;GO:0005524;GO:0006260 K17680

For more detailed data, you can explore the Download section to access the full dataset.