CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1566 rna-evm.model.Chr16.1566 Chr16 48773239 48775527 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr16.1567 rna-evm.model.Chr16.1567 Chr16 48790573 48792485 uncharacterized protein nan nan
gene-evm.TU.Chr16.1568 rna-evm.model.Chr16.1568 Chr16 48912176 48976411 PREDICTED: Sodium-dependent serotonin transporter GO:0016020 K05037
gene-evm.TU.Chr16.1569 rna-evm.model.Chr16.1569 Chr16 49004273 49030662 PREDICTED: Sodium-dependent serotonin transporter GO:0016020 K05037
gene-evm.TU.Chr16.157 rna-evm.model.Chr16.157 Chr16 5452733 5453317 uncharacterized protein nan K06093
gene-evm.TU.Chr16.1571 rna-evm.model.Chr16.1571 Chr16 49065082 49067589 uncharacterized protein nan nan
gene-evm.TU.Chr16.1572 rna-evm.model.Chr16.1572 Chr16 49106177 49120072 PREDICTED: Atrial natriuretic peptide receptor 2 GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr16.1573 rna-evm.model.Chr16.1573 Chr16 49121862 49131788 PREDICTED: Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog nan K00477
gene-evm.TU.Chr16.1574 rna-evm.model.Chr16.1574 Chr16 49201828 49276852 PREDICTED: Neurotrypsin GO:0004222;GO:0004252;GO:0004867;GO:0005044;GO:0006508;GO:0008237;GO:0008270;GO:0016020 K09640
gene-evm.TU.Chr16.1575 rna-evm.model.Chr16.1575 Chr16 49285695 49291256 PREDICTED: Pre-rRNA-processing protein TSR1 homolog GO:0042254 K14799

For more detailed data, you can explore the Download section to access the full dataset.