CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1556 rna-evm.model.Chr16.1556 Chr16 48563583 48568769 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0008289 K08753
gene-evm.TU.Chr16.1557 rna-evm.model.Chr16.1557 Chr16 48588385 48591311 PREDICTED: Voltage-gated hydrogen channel 1 GO:0005216;GO:0005886;GO:0006811;GO:0016020;GO:0030171;GO:0055085;GO:1902600 K22644
gene-evm.TU.Chr16.1558 rna-evm.model.Chr16.1558 Chr16 48592918 48637913 PREDICTED: Active breakpoint cluster region-related protein GO:0005085;GO:0005096;GO:0007165;GO:0035023;GO:0043547 K08878
gene-evm.TU.Chr16.1559 rna-evm.model.Chr16.1559 Chr16 48655958 48658349 PREDICTED: Synaptosomal-associated protein 29 nan K08509
gene-evm.TU.Chr16.156 rna-evm.model.Chr16.156 Chr16 5342066 5406062 PREDICTED: Poly(A)-specific ribonuclease PNLDC1 nan K01148
gene-evm.TU.Chr16.1561 rna-evm.model.Chr16.1561 Chr16 48717009 48722386 PREDICTED: Collagen alpha-1(XIV) chain GO:0005576;GO:0006030;GO:0008061 K06238
gene-evm.TU.Chr16.1562 rna-evm.model.Chr16.1562 Chr16 48738003 48747718 PREDICTED: Collagen alpha-1(XII) chain nan K19467
gene-evm.TU.Chr16.1563 rna-evm.model.Chr16.1563 Chr16 48748885 48749703 PREDICTED: RNA polymerase II-associated factor 1 GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr16.1564 rna-evm.model.Chr16.1564 Chr16 48753225 48755049 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr16.1565 rna-evm.model.Chr16.1565 Chr16 48756484 48766092 PREDICTED: Cartilage matrix protein nan K06238

For more detailed data, you can explore the Download section to access the full dataset.