CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1529 rna-evm.model.Chr16.1529 Chr16 47982138 47994513 PREDICTED: Cytochrome P450 4F22 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr16.153 rna-evm.model.Chr16.153 Chr16 5137694 5203007 PREDICTED: Poly(A)-specific ribonuclease PNLDC1 nan K01148
gene-evm.TU.Chr16.1530 rna-evm.model.Chr16.1530 Chr16 47997045 48022968 PREDICTED: Probable RNA-binding protein 19 GO:0003676 K14787
gene-evm.TU.Chr16.1531 rna-evm.model.Chr16.1531 Chr16 48025647 48076912 PREDICTED: Serine/threonine-protein phosphatase 4 catalytic subunit GO:0008270;GO:0016787 K15423
gene-evm.TU.Chr16.1532 rna-evm.model.Chr16.1532 Chr16 48081112 48096626 PREDICTED: Flotillin-2 nan K07192
gene-evm.TU.Chr16.1533 rna-evm.model.Chr16.1533 Chr16 48103515 48111731 PREDICTED: Protein PF14_0175 nan K12047
gene-evm.TU.Chr16.1536 rna-evm.model.Chr16.1536 Chr16 48128328 48128729 PREDICTED: zinc finger CCCH domain-containing protein 11 GO:0003676 K22594
gene-evm.TU.Chr16.1537 rna-evm.model.Chr16.1537 Chr16 48145638 48155017 PREDICTED: Scavenger receptor class A member 5 GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr16.1539 rna-evm.model.Chr16.1539 Chr16 48159834 48161431 PREDICTED: Adhesion G protein-coupled receptor B1 nan K24429
gene-evm.TU.Chr16.154 rna-evm.model.Chr16.154 Chr16 5283522 5285674 PREDICTED: poly(A)-specific ribonuclease [EC:3.1.13.4] nan K01148

For more detailed data, you can explore the Download section to access the full dataset.