CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1541 rna-evm.model.Chr16.1541 Chr16 48237801 48238775 uncharacterized protein nan K06921
gene-evm.TU.Chr16.1543 rna-evm.model.Chr16.1543 Chr16 48240320 48246314 PREDICTED: neuroblastoma-amplified sequence GO:0003676 K22534
gene-evm.TU.Chr16.1544 rna-evm.model.Chr16.1544 Chr16 48252510 48254682 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr16.155 rna-evm.model.Chr16.155 Chr16 5335468 5341980 PREDICTED: Poly(A)-specific ribonuclease PNLDC1 nan K01148
gene-evm.TU.Chr16.1550 rna-evm.model.Chr16.1550 Chr16 48450450 48451219 PREDICTED: Ras-like protein family member 10B GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07851
gene-evm.TU.Chr16.1551 rna-evm.model.Chr16.1551 Chr16 48514867 48517065 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr16.1552 rna-evm.model.Chr16.1552 Chr16 48520017 48530397 PREDICTED: proteoglycan 4-like nan K19486
gene-evm.TU.Chr16.1553 rna-evm.model.Chr16.1553 Chr16 48532140 48541544 PREDICTED: Deoxynucleotidyltransferase terminal-interacting protein 1 nan K08707
gene-evm.TU.Chr16.1554 rna-evm.model.Chr16.1554 Chr16 48545544 48550928 PREDICTED: Fibropellin-3 GO:0005509 K19601
gene-evm.TU.Chr16.1555 rna-evm.model.Chr16.1555 Chr16 48553092 48557358 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0008289 K08753

For more detailed data, you can explore the Download section to access the full dataset.