CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1515 rna-evm.model.Chr16.1515 Chr16 47337413 47338422 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr16.1516 rna-evm.model.Chr16.1516 Chr16 47425864 47426463 PREDICTED: serine/arginine repetitive matrix protein 2 nan K00983
gene-evm.TU.Chr16.1518 rna-evm.model.Chr16.1518 Chr16 47428276 47430862 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr16.1519 rna-evm.model.Chr16.1519 Chr16 47443624 47444736 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.152 rna-evm.model.Chr16.152 Chr16 5098012 5098469 uncharacterized protein nan K06501
gene-evm.TU.Chr16.1520 rna-evm.model.Chr16.1520 Chr16 47600742 47624547 PREDICTED: Acid-sensing ion channel 4-B GO:0005272;GO:0006814;GO:0016020 K04827
gene-evm.TU.Chr16.1521 rna-evm.model.Chr16.1521 Chr16 47656979 47657473 uncharacterized protein nan K18547
gene-evm.TU.Chr16.1523 rna-evm.model.Chr16.1523 Chr16 47825387 47844528 PREDICTED: Ran-specific GTPase-activating protein GO:0046907 K15306
gene-evm.TU.Chr16.1525 rna-evm.model.Chr16.1525 Chr16 47872316 47948328 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0005576;GO:0006030;GO:0008061;GO:0016020 K13912
gene-evm.TU.Chr16.1528 rna-evm.model.Chr16.1528 Chr16 47979799 47981105 uncharacterized protein nan K14569

For more detailed data, you can explore the Download section to access the full dataset.