CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1503 rna-evm.model.Chr16.1503 Chr16 46684233 46691665 PREDICTED: ankyrin repeat domain-containing protein 50 nan nan
gene-evm.TU.Chr16.1505 rna-evm.model.Chr16.1505 Chr16 46764763 46800657 uncharacterized protein nan K02186
gene-evm.TU.Chr16.1506 rna-evm.model.Chr16.1506 Chr16 46804794 46806726 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr16.1507 rna-evm.model.Chr16.1507 Chr16 46818297 46850971 PREDICTED: Myotubularin-related protein 4 GO:0016311;GO:0016791;GO:0046872 K18082
gene-evm.TU.Chr16.1508 rna-evm.model.Chr16.1508 Chr16 46871245 46883687 uncharacterized protein nan K13181
gene-evm.TU.Chr16.1509 rna-evm.model.Chr16.1509 Chr16 46909992 46910744 uncharacterized protein nan K25053
gene-evm.TU.Chr16.1511 rna-evm.model.Chr16.1511 Chr16 47073147 47075352 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.1512 rna-evm.model.Chr16.1512 Chr16 47261499 47262648 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr16.1513 rna-evm.model.Chr16.1513 Chr16 47324430 47335222 uncharacterized protein nan nan
gene-evm.TU.Chr16.1514 rna-evm.model.Chr16.1514 Chr16 47336366 47337019 PREDICTED: KRAB domain-containing zinc finger protein nan K00028

For more detailed data, you can explore the Download section to access the full dataset.