CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2439 rna-evm.model.Chr1.2439 Chr1 76602581 76667395 PREDICTED: Transmembrane protein 131 nan K04629
gene-evm.TU.Chr1.2440 rna-evm.model.Chr1.2440 Chr1 76670099 76676111 PREDICTED: ELMO domain-containing protein 2 nan K23538
gene-evm.TU.Chr1.2441 rna-evm.model.Chr1.2441 Chr1 76686824 76716535 PREDICTED: Kinase D-interacting substrate of 220 kDa B GO:0005515 K12460
gene-evm.TU.Chr1.2442 rna-evm.model.Chr1.2442 Chr1 76746078 76755360 PREDICTED: Protein POLR1D, isoform 2 nan K13165
gene-evm.TU.Chr1.2443 rna-evm.model.Chr1.2443 Chr1 76759606 76762183 uncharacterized protein nan K11244
gene-evm.TU.Chr1.2444 rna-evm.model.Chr1.2444 Chr1 76768863 76796204 PREDICTED: cGMP-gated cation channel alpha-1 GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04948
gene-evm.TU.Chr1.2445 rna-evm.model.Chr1.2445 Chr1 76813980 76816902 uncharacterized protein nan K03626
gene-evm.TU.Chr1.2446 rna-evm.model.Chr1.2446 Chr1 76819798 76854410 PREDICTED: LIM and calponin homology domains-containing protein 1 GO:0005515;GO:0023051;GO:0030155 K06084
gene-evm.TU.Chr1.2447 rna-evm.model.Chr1.2447 Chr1 76862370 76868440 PREDICTED: LWamide neuropeptides nan K24296
gene-evm.TU.Chr1.2448 rna-evm.model.Chr1.2448 Chr1 76869469 76870169 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222

For more detailed data, you can explore the Download section to access the full dataset.