CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1490 rna-evm.model.Chr16.1490 Chr16 46450552 46455682 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.1491 rna-evm.model.Chr16.1491 Chr16 46459255 46464094 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.1493 rna-evm.model.Chr16.1493 Chr16 46469314 46475963 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.1494 rna-evm.model.Chr16.1494 Chr16 46480202 46500797 PREDICTED: Protein toll GO:0005515;GO:0007165 K05401
gene-evm.TU.Chr16.1495 rna-evm.model.Chr16.1495 Chr16 46506576 46509271 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.1496 rna-evm.model.Chr16.1496 Chr16 46511240 46516080 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.1499 rna-evm.model.Chr16.1499 Chr16 46610043 46611936 PREDICTED: conserved Plasmodium protein, unknown function nan K15771
gene-evm.TU.Chr16.15 rna-evm.model.Chr16.15 Chr16 534165 544188 PREDICTED: Intraflagellar transport protein 22 homolog nan K07935
gene-evm.TU.Chr16.1500 rna-evm.model.Chr16.1500 Chr16 46617911 46625334 PREDICTED: NAD-dependent protein lipoamidase sirtuin-4, mitochondrial GO:0070403 K11414
gene-evm.TU.Chr16.1501 rna-evm.model.Chr16.1501 Chr16 46626348 46636093 PREDICTED: NIF3-like protein 1 nan K22391

For more detailed data, you can explore the Download section to access the full dataset.