CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1480 rna-evm.model.Chr16.1480 Chr16 46203284 46204196 uncharacterized protein nan K19873
gene-evm.TU.Chr16.1481 rna-evm.model.Chr16.1481.1 Chr16 46281962 46342358 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K22615
gene-evm.TU.Chr16.1482 rna-evm.model.Chr16.1482 Chr16 46342545 46345192 PREDICTED: Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 nan K22758
gene-evm.TU.Chr16.1483 rna-evm.model.Chr16.1483 Chr16 46348488 46368123 PREDICTED: Kinesin-like protein KIF22 GO:0003677;GO:0003777;GO:0005524;GO:0006281;GO:0007018;GO:0008017 K10403
gene-evm.TU.Chr16.1485 rna-evm.model.Chr16.1485 Chr16 46374562 46391558 PREDICTED: DNA repair protein XRCC1 GO:0000012;GO:0003684;GO:0005634 K10803
gene-evm.TU.Chr16.1486 rna-evm.model.Chr16.1486 Chr16 46394295 46397205 PREDICTED: Transmembrane protein 47 GO:0016020 K10136
gene-evm.TU.Chr16.1487 rna-evm.model.Chr16.1487 Chr16 46407466 46416930 PREDICTED: Eukaryotic translation initiation factor 4H GO:0003676 K24086
gene-evm.TU.Chr16.1488_evm.TU.Chr16.1497 rna-evm.model.Chr16.1488_evm.model.Chr16.1497 Chr16 46418973 46537100 PREDICTED: Myb-binding protein 1A-like protein GO:0003677;GO:0005730;GO:0006355;GO:0008134 K02331
gene-evm.TU.Chr16.1489 rna-evm.model.Chr16.1489 Chr16 46440055 46442616 PREDICTED: Slit homolog 2 protein GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.149 rna-evm.model.Chr16.149 Chr16 4894398 4897395 PREDICTED: G-protein coupled receptor 143 GO:0004930;GO:0007186;GO:0016020;GO:0035240;GO:0072544;GO:0072545 K08470

For more detailed data, you can explore the Download section to access the full dataset.