CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1462 rna-evm.model.Chr16.1462 Chr16 45792636 45821864 PREDICTED: Macrophage scavenger receptor types I and II GO:0005044;GO:0016020 K17300
gene-evm.TU.Chr16.1464 rna-evm.model.Chr16.1464 Chr16 45858167 45880246 PREDICTED: Leucine-rich repeat and WD repeat-containing protein 1 GO:0005515 K24733
gene-evm.TU.Chr16.1465_evm.TU.Chr16.1474_evm.TU.Chr16.1475 rna-evm.model.Chr16.1465_evm.model.Chr16.1474_evm.model.Chr16.1475 Chr16 45885864 46098890 PREDICTED: Cellular retinoic acid-binding protein 2 GO:0008289 K17289
gene-evm.TU.Chr16.1468 rna-evm.model.Chr16.1468 Chr16 45931665 45933345 PREDICTED: Uncharacterized protein DDB_G0290685 nan nan
gene-evm.TU.Chr16.147 rna-evm.model.Chr16.147 Chr16 4847985 4856884 PREDICTED: Dimethylaniline monooxygenase [N-oxide-forming] 5 GO:0004499;GO:0050660;GO:0050661;GO:0055114 K00485
gene-evm.TU.Chr16.1472 rna-evm.model.Chr16.1472 Chr16 46006615 46008391 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan
gene-evm.TU.Chr16.1473 rna-evm.model.Chr16.1473 Chr16 46041207 46047563 PREDICTED: Cellular retinoic acid-binding protein 1 GO:0008289 K17337
gene-evm.TU.Chr16.1477 rna-evm.model.Chr16.1477 Chr16 46133971 46136072 PREDICTED: cyclic GMP-AMP synthase [EC:2.7.7.86] nan K17834
gene-evm.TU.Chr16.1479 rna-evm.model.Chr16.1479 Chr16 46182611 46203235 uncharacterized protein nan K00725
gene-evm.TU.Chr16.148 rna-evm.model.Chr16.148 Chr16 4885221 4885436 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.