CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.1450 rna-evm.model.Chr16.1450 Chr16 45282003 45341778 PREDICTED: Membrane-associated phosphatidylinositol transfer protein 3 GO:0005548;GO:0015914;GO:0046872 K24069
gene-evm.TU.Chr16.1451 rna-evm.model.Chr16.1451 Chr16 45358665 45368592 uncharacterized protein nan nan
gene-evm.TU.Chr16.1452 rna-evm.model.Chr16.1452 Chr16 45374078 45381925 uncharacterized protein nan K19252
gene-evm.TU.Chr16.1454 rna-evm.model.Chr16.1454 Chr16 45425003 45433483 PREDICTED: 60S acidic ribosomal protein P2 nan K02943
gene-evm.TU.Chr16.1455 rna-evm.model.Chr16.1455 Chr16 45441713 45451703 PREDICTED: E3 ubiquitin-protein ligase RNF34 nan K20804
gene-evm.TU.Chr16.1456 rna-evm.model.Chr16.1456 Chr16 45463694 45468780 PREDICTED: D-erythrulose reductase nan K00059
gene-evm.TU.Chr16.1458 rna-evm.model.Chr16.1458 Chr16 45593515 45688299 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr16.1459 rna-evm.model.Chr16.1459 Chr16 45733362 45738670 uncharacterized protein nan K13254
gene-evm.TU.Chr16.146 rna-evm.model.Chr16.146 Chr16 4781535 4828049 PREDICTED: P2X purinoceptor 4 GO:0001614;GO:0004931;GO:0005886;GO:0033198;GO:0098655 K05218
gene-evm.TU.Chr16.1461 rna-evm.model.Chr16.1461 Chr16 45758457 45764158 PREDICTED: RNA-binding protein 25-like nan K02558

For more detailed data, you can explore the Download section to access the full dataset.